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The result is a registered image which will be saved to the location specified in the Output image box. The second mode of operation is a two stage registration which takes an input Low res image and two target images. It initially registers the low res image to a High res image and then registers this high res image to the final Reference image. The two resulting transformations are concatenated and then applied to the original low res image to create an Output image that is a version of the low res image transformed resliced to the reference image space.
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